7SSR
Crystal Structure of Ebola zaire Envelope glycoprotein GP in complex with compound ARN0075093
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | APS BEAMLINE 21-ID-F |
Synchrotron site | APS |
Beamline | 21-ID-F |
Temperature [K] | 100 |
Detector technology | CCD |
Collection date | 2021-10-08 |
Detector | RAYONIX MX-300 |
Wavelength(s) | 0.97872 |
Spacegroup name | H 3 2 |
Unit cell lengths | 114.070, 114.070, 308.090 |
Unit cell angles | 90.00, 90.00, 120.00 |
Refinement procedure
Resolution | 31.930 - 2.500 |
R-factor | 0.1748 |
Rwork | 0.173 |
R-free | 0.19700 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 6f5u |
RMSD bond length | 0.006 |
RMSD bond angle | 0.754 |
Data reduction software | XDS |
Data scaling software | XSCALE |
Phasing software | PHASER |
Refinement software | PHENIX (1.20rc1) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 50.000 | 50.000 | 2.560 |
High resolution limit [Å] | 2.500 | 11.180 | 2.500 |
Rmerge | 0.056 | 0.032 | 0.619 |
Rmeas | 0.062 | 0.037 | 0.695 |
Number of reflections | 26682 | 310 | 1972 |
<I/σ(I)> | 16.24 | 32.48 | 2.34 |
Completeness [%] | 98.2 | 87.3 | 99.5 |
Redundancy | 4.711 | 4.161 | 4.739 |
CC(1/2) | 0.998 | 0.998 | 0.857 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 4.3 | 287 | Optimization condition around ProPlex screen, condition E1: 100mM sodium acetate / hydrochloride pH 4.3, 8.07% (w/V) PEG 8000, 100mM magnesium chloride: EbzaA.19907.a.HE11.PD38458 at 14.4mg/ml + 1mM BSI110988 / ARN00075093: tray 322831c7: cryo: 25% EG + 1mM compound: puck sni3-1 |