7SSQ
Crystal Structure of Ebola zaire Envelope glycoprotein GP in complex with compound ARN0075231
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | APS BEAMLINE 21-ID-F |
Synchrotron site | APS |
Beamline | 21-ID-F |
Temperature [K] | 100 |
Detector technology | CCD |
Collection date | 2021-10-08 |
Detector | RAYONIX MX-300 |
Wavelength(s) | 0.97872 |
Spacegroup name | H 3 2 |
Unit cell lengths | 113.940, 113.940, 308.490 |
Unit cell angles | 90.00, 90.00, 120.00 |
Refinement procedure
Resolution | 31.920 - 2.250 |
R-factor | 0.181 |
Rwork | 0.180 |
R-free | 0.20330 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 6f5u |
RMSD bond length | 0.009 |
RMSD bond angle | 0.907 |
Data reduction software | XDS |
Data scaling software | XSCALE |
Phasing software | PHASER |
Refinement software | PHENIX (1.20rc1) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 50.000 | 50.000 | 2.310 |
High resolution limit [Å] | 2.250 | 10.060 | 2.250 |
Rmerge | 0.050 | 0.029 | 0.606 |
Rmeas | 0.056 | 0.033 | 0.710 |
Number of reflections | 36679 | 455 | 2478 |
<I/σ(I)> | 17.81 | 41.42 | 1.66 |
Completeness [%] | 99.1 | 94.6 | 91.8 |
Redundancy | 4.94 | 4.51 | 3.208 |
CC(1/2) | 0.999 | 0.998 | 0.730 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 4.8 | 287 | Optimization condition around ProPlex screen, condition E1: 100mM sodium acetate / hydrochloride pH 4.8, 7.49% (w/V) PEG 8000, 100mM magnesium chloride: EbzaA.19907.a.HE11.PD38458 at 14.4mg/ml + 1mM BSI111592 / ARN00075231: tray 322840 h3: cryo: 25% EG + 1mM compound: puck sni3-8 |