7SMJ
F2N structure, protein design with deep learning
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | SSRL BEAMLINE BL12-2 |
Synchrotron site | SSRL |
Beamline | BL12-2 |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2021-01-11 |
Detector | DECTRIS PILATUS 6M |
Wavelength(s) | 0.97946 |
Spacegroup name | P 21 21 21 |
Unit cell lengths | 47.130, 48.720, 75.580 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 37.790 - 1.580 |
R-factor | 0.1779 |
Rwork | 0.175 |
R-free | 0.23790 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | AI predicted model |
RMSD bond length | 0.010 |
RMSD bond angle | 1.535 |
Data reduction software | XDS |
Data scaling software | XSCALE |
Phasing software | PHASER |
Refinement software | REFMAC (5.8.0267) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 37.790 | 37.790 | 1.620 |
High resolution limit [Å] | 1.580 | 7.070 | 1.580 |
Rmerge | 0.050 | 0.039 | 2.113 |
Rmeas | 0.051 | 0.039 | 2.190 |
Total number of observations | 808181 | ||
Number of reflections | 24478 | 328 | 1782 |
<I/σ(I)> | 32.23 | 82.46 | 1.42 |
Completeness [%] | 99.9 | 99.4 | 99.9 |
Redundancy | 33.017 | 31.47 | 14.498 |
CC(1/2) | 1.000 | 1.000 | 0.818 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 6 | 293 | 25% PEG 3350, 0.15 MgOAc, 0.1 Bis TRIS pH 6.0 |