7SGV
Papain-Like Protease of SARS CoV-2, C111S mutant, in complex with PLP_Snyder630 inhibitor
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | APS BEAMLINE 19-ID |
Synchrotron site | APS |
Beamline | 19-ID |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2020-09-23 |
Detector | DECTRIS PILATUS3 X 6M |
Wavelength(s) | 0.9792 |
Spacegroup name | P 32 2 1 |
Unit cell lengths | 82.982, 82.982, 134.021 |
Unit cell angles | 90.00, 90.00, 120.00 |
Refinement procedure
Resolution | 44.710 - 2.000 |
R-factor | 0.1819 |
Rwork | 0.181 |
R-free | 0.20740 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 6wrh |
RMSD bond length | 0.009 |
RMSD bond angle | 1.486 |
Data reduction software | HKL-3000 |
Data scaling software | HKL-3000 |
Phasing software | HKL-3000 |
Refinement software | REFMAC (5.8.0267) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 44.710 | 44.710 | 2.030 |
High resolution limit [Å] | 2.000 | 5.430 | 2.000 |
Rmerge | 0.189 | 0.121 | 1.254 |
Rmeas | 0.201 | 0.128 | 1.357 |
Rpim | 0.065 | 0.042 | 0.503 |
Number of reflections | 36245 | 1999 | 1429 |
<I/σ(I)> | 7 | 1.01 | |
Completeness [%] | 99.0 | 99.9 | 79.4 |
Redundancy | 8.8 | 9 | 6.1 |
CC(1/2) | 0.977 | 0.993 | 0.497 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 7 | 277 | 3 M sodium chloride, 0.1 M Bis_tris buffer, pH 5.5 |