7SGJ

Crystal Structure of Danio rerio Histone Deacetylase 10 in Complex with DKFZ-711

Experimental procedure

Experimental method	SINGLE WAVELENGTH
Source type	SYNCHROTRON
Source details	APS BEAMLINE 24-ID-C
Synchrotron site	APS
Beamline	24-ID-C
Temperature [K]	100
Detector technology	PIXEL
Collection date	2019-12-15
Detector	DECTRIS EIGER X 16M
Wavelength(s)	0.97911
Spacegroup name	P 31 2 1
Unit cell lengths	80.408, 80.408, 248.270
Unit cell angles	90.00, 90.00, 120.00

Refinement procedure

Resolution	69.640 - 2.150
R-factor	0.1834
Rwork	0.182
R-free	0.21590
Structure solution method	MOLECULAR REPLACEMENT
Starting model (for MR)	5td7
RMSD bond length	0.007
RMSD bond angle	0.868
Data reduction software	iMOSFLM
Data scaling software	Aimless
Phasing software	PHASER
Refinement software	PHENIX (1.14_3260)

Data quality characteristics

	Overall	Outer shell
Low resolution limit [Å]	69.840	2.210
High resolution limit [Å]	2.150	2.150
Rmerge	0.102	1.119
Rpim	0.050	0.569
Number of reflections	51724	4111
<I/σ(I)>	13	2.1
Completeness [%]	100.0
Redundancy	9.5
CC(1/2)	0.998	0.639

Crystallization Conditions

crystal ID	method	pH	temperature	details
1	VAPOR DIFFUSION, SITTING DROP		277	10 mg/mL HDAC10, 2 mM DKFZ-711, 1:1000 trypsin:HDAC10, 0.100 M Potassium Phosphate Monobasic, 0.100 M Potassium Phosphate Dibasic, and 20% (w/v) PEG3350