7S9K
Crystal Structure of DNA Polymerase Beta with Fapy-dG base-paired with a dA
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | ROTATING ANODE |
Source details | RIGAKU MICROMAX-007 HF |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2020-08-04 |
Detector | DECTRIS PILATUS 200K |
Wavelength(s) | 1.54 |
Spacegroup name | P 1 21 1 |
Unit cell lengths | 54.280, 79.125, 54.882 |
Unit cell angles | 90.00, 105.33, 90.00 |
Refinement procedure
Resolution | 24.850 - 1.970 |
R-factor | 0.1755 |
Rwork | 0.172 |
R-free | 0.22410 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 3isb |
RMSD bond length | 0.010 |
RMSD bond angle | 1.264 |
Data reduction software | HKL-2000 |
Data scaling software | HKL-2000 |
Phasing software | PHENIX (1.17.1_3660) |
Refinement software | PHENIX (1.17.1_3660) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 25.000 | 5.330 |
High resolution limit [Å] | 1.970 | 1.970 |
Number of reflections | 40144 | 1554 |
<I/σ(I)> | 11.14 | |
Completeness [%] | 99.7 | |
Redundancy | 4.3 | |
CC(1/2) | 0.998 | 0.511 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 8 | 291 | 14-19% PEG 3350, 50 mM Imidiazole pH 8.0, 350 mM Sodium Acetate |