7S8D
Structure of DNA-free SgrAI
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | SSRL BEAMLINE BL9-2 |
Synchrotron site | SSRL |
Beamline | BL9-2 |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2014-03-23 |
Detector | DECTRIS PILATUS3 6M |
Wavelength(s) | 1.0 |
Spacegroup name | P 1 21 1 |
Unit cell lengths | 70.110, 72.379, 78.640 |
Unit cell angles | 90.00, 107.95, 90.00 |
Refinement procedure
Resolution | 38.000 - 2.020 |
R-factor | 0.2034 |
Rwork | 0.202 |
R-free | 0.24580 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 3DVO chain A |
RMSD bond length | 0.001 |
RMSD bond angle | 0.432 |
Data reduction software | XDS |
Data scaling software | XDS |
Phasing software | PHASER |
Refinement software | PHENIX (1.19_4080) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 38.000 | 2.097 |
High resolution limit [Å] | 2.020 | 2.020 |
Rmerge | 0.076 | 0.392 |
Rmeas | 0.107 | 0.554 |
Rpim | 0.076 | 0.392 |
Number of reflections | 47684 | 4428 |
<I/σ(I)> | 8.92 | 2.16 |
Completeness [%] | 97.5 | 91.34 |
Redundancy | 2 | 2 |
CC(1/2) | 0.993 | 0.522 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 6.5 | 290 | 5% PEG 4000 0.1 M imidazole pH 6.5 0.1 M NaCl 5 mM Ca(0Ac)2 |