7S6G
Crystal structure of PhnD from Synechococcus MITS9220 in complex with phosphate
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | DIAMOND BEAMLINE I23 |
Synchrotron site | Diamond |
Beamline | I23 |
Temperature [K] | 50 |
Detector technology | PIXEL |
Collection date | 2020-02-28 |
Detector | DECTRIS PILATUS 12M |
Wavelength(s) | 3.09960, 2.7552, 4.8621, 5.1660 |
Spacegroup name | C 1 2 1 |
Unit cell lengths | 63.590, 40.670, 106.680 |
Unit cell angles | 90.00, 92.13, 90.00 |
Refinement procedure
Resolution | 106.606 - 2.020 |
Rwork | 0.153 |
R-free | 0.17630 |
Structure solution method | SAD |
RMSD bond length | 0.012 |
RMSD bond angle | 1.725 |
Data reduction software | XDS |
Data scaling software | XSCALE |
Phasing software | CRANK2 |
Refinement software | REFMAC (5.8.0267) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 106.606 | 101.200 | 1.840 |
High resolution limit [Å] | 1.800 | 8.990 | 1.800 |
Rmerge | 0.062 | 0.030 | 0.580 |
Rmeas | 0.068 | 0.033 | 0.714 |
Rpim | 0.027 | 0.012 | 0.408 |
Number of reflections | 18073 | 228 | 1308 |
<I/σ(I)> | 17.1 | ||
Completeness [%] | 69.8 | ||
Redundancy | 10.3 | 12 | 5.1 |
CC(1/2) | 0.999 | 0.999 | 0.939 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 8.5 | 295 | 0.1M Tris pH 8.5, 25 % PEG 3350, 30 % Ethylene Glycol |