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7S5M

Crystal Structure of a 8-amino-7-oxononanoate synthase/2-amino-3-ketobutyrate coenzyme A ligase from Mycobacterium smegmatis

Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeSYNCHROTRON
Source detailsALS BEAMLINE 5.0.2
Synchrotron siteALS
Beamline5.0.2
Temperature [K]100
Detector technologyCCD
Collection date2010-05-30
DetectorADSC QUANTUM 315r
Wavelength(s)0.9795
Spacegroup nameP 1 21 1
Unit cell lengths60.710, 108.940, 108.340
Unit cell angles90.00, 94.65, 90.00
Refinement procedure
Resolution46.230 - 2.250
R-factor0.2315
Rwork0.230
R-free0.27430
Structure solution methodMOLECULAR REPLACEMENT
Starting model (for MR)3wy7 as per Morda
RMSD bond length0.007
RMSD bond angle0.924
Data reduction softwareXDS
Data scaling softwareXSCALE
Phasing softwareMoRDa
Refinement softwarePHENIX (1.18 4274)
Data quality characteristics
 OverallInner shellOuter shell
Low resolution limit [Å]50.00050.0002.310
High resolution limit [Å]2.25010.0602.250
Rmerge0.0870.0410.621
Rmeas0.0980.0460.702
Number of reflections658617544777
<I/σ(I)>11.0728.222.31
Completeness [%]98.896.397.5
Redundancy4.5364.1994.603
CC(1/2)0.9970.9980.837
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1VAPOR DIFFUSION, SITTING DROP6.5287Hampton Research PACT screen, condition F7: 200mM Sodium acetate, 100mM BisTris propane pH 6.5, 20% (w/V) PEG 3350: MysmA.00272.a.A1.PW28493 at 24.73mg/ml: tray 215578 F7: cryo: 20% EG: puck KFC7-1

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PDB entries from 2026-03-18

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