7S5F
Crystal structure of mannose-6-phosphate reductase from celery (Apium graveolens) leaves with NADP+ and mannonic acid bound
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | APS BEAMLINE 19-ID |
Synchrotron site | APS |
Beamline | 19-ID |
Temperature [K] | 100 |
Detector technology | CCD |
Collection date | 2019-06-15 |
Detector | ADSC QUANTUM 315r |
Wavelength(s) | 1.008 |
Spacegroup name | C 1 2 1 |
Unit cell lengths | 152.202, 61.779, 148.063 |
Unit cell angles | 90.00, 107.67, 90.00 |
Refinement procedure
Resolution | 38.070 - 1.720 |
R-factor | 0.1823 |
Rwork | 0.181 |
R-free | 0.21060 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 2iki |
RMSD bond length | 0.005 |
RMSD bond angle | 0.960 |
Data reduction software | HKL-2000 |
Data scaling software | HKL-3000 |
Phasing software | PHASER |
Refinement software | PHENIX (1.19.2_4158) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 50.000 | 1.760 |
High resolution limit [Å] | 1.720 | 1.720 |
Rmerge | 0.081 | |
Number of reflections | 132086 | 6719 |
<I/σ(I)> | 15 | 2.2 |
Completeness [%] | 95.8 | |
Redundancy | 6 | |
CC(1/2) | 0.997 | 0.710 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 6.6 | 297 | 0.2 M ammonium formate, 20% (w/v) PEG 3500 |