7RXT
Crystal of BRD4(D1) with 2-[(3R)-3-{5-[2-(3,5-dimethylphenoxy)pyrimidin-4-yl]-4-(4-iodophenyl)-1H-imidazol-1-yl}pyrrolidin-1-yl]ethan-1-amine
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | APS BEAMLINE 24-ID-E |
Synchrotron site | APS |
Beamline | 24-ID-E |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2020-08-10 |
Detector | DECTRIS EIGER X 16M |
Wavelength(s) | 0.9791 |
Spacegroup name | P 2 21 21 |
Unit cell lengths | 30.067, 41.663, 110.479 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 38.980 - 1.680 |
R-factor | 0.2022 |
Rwork | 0.201 |
R-free | 0.23780 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 7jt4 |
Data reduction software | XDS |
Data scaling software | Aimless (0.7.4) |
Phasing software | PHASER |
Refinement software | PHENIX (1.19.2_4158) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 110.480 | 110.480 | 1.710 |
High resolution limit [Å] | 1.680 | 9.030 | 1.680 |
Rmerge | 0.059 | 0.037 | 0.516 |
Rmeas | 0.066 | 0.043 | 0.581 |
Rpim | 0.029 | 0.022 | 0.261 |
Total number of observations | 77912 | 499 | 3552 |
Number of reflections | 16435 | 135 | 772 |
<I/σ(I)> | 20.5 | 60.3 | 2.7 |
Completeness [%] | 99.0 | 93.8 | 93.8 |
Redundancy | 4.7 | 3.7 | 4.6 |
CC(1/2) | 0.998 | 0.993 | 0.853 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 295 | PEG 3350 |