7RVI
Segment from naked mole rat (elk T174S) prion protein 168-176 QYNNQNSFV
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | ELECTRON MICROSCOPE |
Source details | OTHER |
Temperature [K] | 100 |
Detector technology | CMOS |
Collection date | 2018-06-28 |
Detector | TVIPS TEMCAM-F416 |
Wavelength(s) | 0.0251 |
Spacegroup name | C 1 2 1 |
Unit cell lengths | 62.760, 4.850, 21.520 |
Unit cell angles | 90.00, 109.14, 90.00 |
Refinement procedure
Resolution | 10.760 - 1.050 |
R-factor | 0.2271 |
Rwork | 0.222 |
R-free | 0.26480 |
Structure solution method | AB INITIO PHASING |
Data reduction software | XDS |
Data scaling software | XSCALE |
Phasing software | SHELXD |
Refinement software | PHENIX (1.19.2_4158) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 10.760 | 10.760 | 1.080 |
High resolution limit [Å] | 1.050 | 4.700 | 1.050 |
Rmerge | 0.287 | 0.152 | 0.589 |
Rmeas | 0.305 | 0.161 | 0.623 |
Total number of observations | 21917 | ||
Number of reflections | 2612 | 18 | 187 |
<I/σ(I)> | 5 | 7.99 | 2.47 |
Completeness [%] | 79.9 | 37.5 | 83.5 |
Redundancy | 8.391 | 6.222 | 8.561 |
CC(1/2) | 0.981 | 0.991 | 0.913 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 6.5 | 298 | 0.1 M sodium cacodylate, pH 6.5, 5% isopropanol, 0.1 M zinc acetate |