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7RRL

Alternate Crystal Form of Human Malate Dehydrogenase I

Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeSYNCHROTRON
Source detailsAPS BEAMLINE 17-ID
Synchrotron siteAPS
Beamline17-ID
Temperature [K]100
Detector technologyPIXEL
Collection date2020-03-15
DetectorDECTRIS EIGER2 X 9M
Wavelength(s)1.0
Spacegroup nameP 1 21 1
Unit cell lengths67.875, 62.593, 74.322
Unit cell angles90.00, 91.22, 90.00
Refinement procedure
Resolution46.010 - 2.050
R-factor0.1887
Rwork0.186
R-free0.23670
Structure solution methodMOLECULAR REPLACEMENT
Starting model (for MR)5mdh
RMSD bond length0.007
RMSD bond angle0.849
Data scaling softwareAimless (0.7.4)
Phasing softwarePHASER
Refinement softwarePHENIX (1.19.2)
Data quality characteristics
 OverallOuter shell
Low resolution limit [Å]74.3102.160
High resolution limit [Å]2.0502.050
Rmerge0.0960.601
Rmeas0.1140.702
Rpim0.0600.359
Total number of observations135782
Number of reflections391225707
<I/σ(I)>8.4
Completeness [%]99.5100
Redundancy3.53.7
CC(1/2)0.9950.724
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1VAPOR DIFFUSION, HANGING DROP29328% PEG 4000, 100 mM NaMalonate pH 7.2, and 0.15 mM ammonium acetate

219869

PDB entries from 2024-05-15

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