7RRL
Alternate Crystal Form of Human Malate Dehydrogenase I
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | APS BEAMLINE 17-ID |
Synchrotron site | APS |
Beamline | 17-ID |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2020-03-15 |
Detector | DECTRIS EIGER2 X 9M |
Wavelength(s) | 1.0 |
Spacegroup name | P 1 21 1 |
Unit cell lengths | 67.875, 62.593, 74.322 |
Unit cell angles | 90.00, 91.22, 90.00 |
Refinement procedure
Resolution | 46.010 - 2.050 |
R-factor | 0.1887 |
Rwork | 0.186 |
R-free | 0.23670 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 5mdh |
RMSD bond length | 0.007 |
RMSD bond angle | 0.849 |
Data scaling software | Aimless (0.7.4) |
Phasing software | PHASER |
Refinement software | PHENIX (1.19.2) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 74.310 | 2.160 |
High resolution limit [Å] | 2.050 | 2.050 |
Rmerge | 0.096 | 0.601 |
Rmeas | 0.114 | 0.702 |
Rpim | 0.060 | 0.359 |
Total number of observations | 135782 | |
Number of reflections | 39122 | 5707 |
<I/σ(I)> | 8.4 | |
Completeness [%] | 99.5 | 100 |
Redundancy | 3.5 | 3.7 |
CC(1/2) | 0.995 | 0.724 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 293 | 28% PEG 4000, 100 mM NaMalonate pH 7.2, and 0.15 mM ammonium acetate |