7RNK
Room temperature X-ray structure of SARS-CoV-2 main protease (Mpro) in complex with HL-3-71
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | ROTATING ANODE |
Source details | RIGAKU MICROMAX-007 HF |
Temperature [K] | 293 |
Detector technology | PIXEL |
Collection date | 2021-03-26 |
Detector | DECTRIS EIGER R 4M |
Wavelength(s) | 1.5406 |
Spacegroup name | I 1 2 1 |
Unit cell lengths | 52.284, 81.607, 91.432 |
Unit cell angles | 90.00, 95.50, 90.00 |
Refinement procedure
Resolution | 26.060 - 2.100 |
R-factor | 0.1772 |
Rwork | 0.176 |
R-free | 0.20640 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 7ltj |
RMSD bond length | 0.002 |
RMSD bond angle | 0.429 |
Data reduction software | CrysalisPro |
Data scaling software | Aimless |
Phasing software | PHASER |
Refinement software | PHENIX ((1.17.1_3660: ???)) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 60.760 | 2.180 |
High resolution limit [Å] | 2.100 | 2.100 |
Rmerge | 0.099 | 0.525 |
Rpim | 0.053 | 0.279 |
Number of reflections | 22348 | 2239 |
<I/σ(I)> | 11.47 | 1.96 |
Completeness [%] | 99.9 | 100 |
Redundancy | 4.5 | |
CC(1/2) | 0.984 | 0.741 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 7 | 287 | 18-21% PEG3350, 0.1 M Bis-Tris pH 6.5 or pH 7.0 |