7RNA
Crystal structure of caspase-3 with inhibitor Ac-ITV(Dab)D-CHO
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | APS BEAMLINE 17-ID |
Synchrotron site | APS |
Beamline | 17-ID |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2021-04-18 |
Detector | DECTRIS EIGER2 X 9M |
Wavelength(s) | 1.0 |
Spacegroup name | P 1 21 1 |
Unit cell lengths | 50.055, 66.166, 83.217 |
Unit cell angles | 90.00, 90.93, 90.00 |
Refinement procedure
Resolution | 43.200 - 1.900 |
R-factor | 0.1963 |
Rwork | 0.195 |
R-free | 0.23100 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 2h65 |
RMSD bond length | 0.008 |
RMSD bond angle | 0.997 |
Data reduction software | AutoProcess |
Data scaling software | Aimless (0.7.4) |
Phasing software | PHASER |
Refinement software | PHENIX (1.19.2) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 83.210 | 2.000 |
High resolution limit [Å] | 1.900 | 1.900 |
Rmerge | 0.046 | 0.505 |
Rmeas | 0.060 | 0.642 |
Rpim | 0.037 | 0.391 |
Total number of observations | 88180 | |
Number of reflections | 41055 | 6118 |
<I/σ(I)> | 10.8 | |
Completeness [%] | 95.6 | 97.7 |
Redundancy | 2.1 | 2.2 |
CC(1/2) | 0.998 | 0.765 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 293 | 16% PEG 6000, 5% glycerol, 100 mM sodium citrate pH 6.5, and 10 mM DTT |