7RMU
Structure of Thermomonospora curvata heme-containing DyP-type peroxidase with a modified axial ligand
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | APS BEAMLINE 22-BM |
Synchrotron site | APS |
Beamline | 22-BM |
Temperature [K] | 100 |
Detector technology | CCD |
Collection date | 2021-07-22 |
Detector | MARMOSAIC 300 mm CCD |
Wavelength(s) | 1.0 |
Spacegroup name | P 32 1 2 |
Unit cell lengths | 87.698, 87.698, 107.870 |
Unit cell angles | 90.00, 90.00, 120.00 |
Refinement procedure
Resolution | 43.850 - 2.100 |
R-factor | 0.1733 |
Rwork | 0.170 |
R-free | 0.21030 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 5jxu |
RMSD bond length | 0.007 |
RMSD bond angle | 0.915 |
Data reduction software | HKL-2000 |
Data scaling software | HKL-2000 |
Phasing software | PHASER |
Refinement software | PHENIX (1.17.1-3660) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 50.000 | 50.000 | 2.180 |
High resolution limit [Å] | 2.100 | 4.520 | 2.100 |
Rmerge | 0.078 | 0.037 | 0.816 |
Rmeas | 0.080 | 0.038 | 0.850 |
Rpim | 0.017 | 0.008 | 0.224 |
Total number of observations | 577899 | ||
Number of reflections | 27294 | 2901 | 2237 |
<I/σ(I)> | 10.5 | ||
Completeness [%] | 97.8 | 100 | 81.5 |
Redundancy | 21.2 | 22.2 | 12.2 |
CC(1/2) | 1.000 | 0.410 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 5.6 | 298 | 0.1 M sodium citrate tribasic (pH 5.6), 0.5 M ammonium sulfate, 1.0 M lithium sulfate |