7RI3
Crystal structure of Albireti Toxin, a diphtheria toxin homolog, from Streptomyces albireticuli
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | NSLS-II BEAMLINE 17-ID-1 |
Synchrotron site | NSLS-II |
Beamline | 17-ID-1 |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2018-12-10 |
Detector | DECTRIS EIGER X 9M |
Wavelength(s) | 0.97951 |
Spacegroup name | P 21 21 2 |
Unit cell lengths | 106.950, 137.080, 203.510 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 60.800 - 2.690 |
R-factor | 0.2048 |
Rwork | 0.203 |
R-free | 0.24770 |
Structure solution method | SAD |
RMSD bond length | 0.006 |
RMSD bond angle | 0.782 |
Data reduction software | autoPROC (1.05) |
Data scaling software | autoPROC (1.05) |
Phasing software | CRANK2 |
Refinement software | PHENIX (1.19.1_4122+SVN) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 200.000 | 2.696 |
High resolution limit [Å] | 2.687 | 2.687 |
Rmerge | 0.189 | 1.435 |
Rmeas | 0.196 | 1.486 |
Rpim | 0.052 | 0.383 |
Number of reflections | 83962 | 803 |
<I/σ(I)> | 10.9 | |
Completeness [%] | 99.9 | 100 |
Redundancy | 13.9 | 14.8 |
CC(1/2) | 0.998 | 0.833 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 7 | 293 | 10 mM Tris-HCl pH 7.0, 200 mM calcium acetate hydrate, 20% PEG3000 |