7RGB
O2-, PLP-dependent desaturase Plu4 product-bound enzyme
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | SSRL BEAMLINE BL9-2 |
Synchrotron site | SSRL |
Beamline | BL9-2 |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2018-05-27 |
Detector | DECTRIS PILATUS 6M |
Wavelength(s) | 0.97946 |
Spacegroup name | P 1 21 1 |
Unit cell lengths | 76.372, 72.186, 139.626 |
Unit cell angles | 90.00, 98.44, 90.00 |
Refinement procedure
Resolution | 37.772 - 2.500 |
R-factor | 0.236 |
Rwork | 0.234 |
R-free | 0.26930 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 6c3d |
Data reduction software | XDS |
Data scaling software | Aimless (0.7.1) |
Phasing software | PHASER |
Refinement software | PHENIX (1.14_3260) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 39.740 | 39.740 | 2.580 |
High resolution limit [Å] | 2.500 | 10.310 | 2.500 |
Rmerge | 0.260 | 0.074 | 5.508 |
Rmeas | 0.270 | 0.076 | 5.741 |
Rpim | 0.073 | 0.020 | 1.576 |
Total number of observations | 706448 | 11099 | 58431 |
Number of reflections | 51795 | 796 | 4444 |
<I/σ(I)> | 7.3 | 17.3 | 1.5 |
Completeness [%] | 99.1 | 98.5 | 98 |
Redundancy | 13.6 | 13.9 | 13.1 |
CC(1/2) | 0.995 | 0.998 | 0.486 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 293 | 0.1 M Bis-Tris:HCl; 27% PEG 3350; 0.2 M ammonium acetate; microseeded from crystals grown at pH 6.0; soaked with 2 mM PLP and 3 mM L-arginine for 16 h |