7RDB
Crystal structure of Tspan15 large extracellular loop (Tspan15 LEL)
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | APS BEAMLINE 24-ID-E |
Synchrotron site | APS |
Beamline | 24-ID-E |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2019-10-11 |
Detector | DECTRIS EIGER X 16M |
Wavelength(s) | 0.979 |
Spacegroup name | P 1 |
Unit cell lengths | 83.570, 91.950, 112.380 |
Unit cell angles | 87.55, 86.52, 86.24 |
Refinement procedure
Resolution | 48.670 - 2.520 |
R-factor | 0.2356 |
Rwork | 0.235 |
R-free | 0.27340 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 7rd5 |
RMSD bond length | 0.012 |
RMSD bond angle | 1.406 |
Data reduction software | XDS |
Data scaling software | XSCALE |
Phasing software | PHASER |
Refinement software | PHENIX (1.19.1_4122+SVN) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 48.670 | 2.610 |
High resolution limit [Å] | 2.520 | 2.520 |
Rmerge | 0.146 | 1.290 |
Rmeas | 0.160 | 1.451 |
Rpim | 0.065 | 0.645 |
Number of reflections | 111846 | 11044 |
<I/σ(I)> | 6.85 | 1.34 |
Completeness [%] | 99.4 | 97.51 |
Redundancy | 5.7 | 4.7 |
CC(1/2) | 0.996 | 0.441 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 6.9 | 293 | 0.1 M MES pH 6.9, 34-35 % polyethylene p-400 |