7RAY
Crystal structure of MBD2 with DNA
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | APS BEAMLINE 23-ID-D |
Synchrotron site | APS |
Beamline | 23-ID-D |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2013-07-25 |
Detector | DECTRIS PILATUS3 6M |
Wavelength(s) | 0.97934 |
Spacegroup name | C 2 2 21 |
Unit cell lengths | 37.599, 71.992, 126.107 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 36.000 - 1.780 |
R-factor | 0.2113 |
Rwork | 0.209 |
R-free | 0.25270 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 6c2z |
RMSD bond length | 0.007 |
RMSD bond angle | 1.217 |
Data reduction software | XDS |
Data scaling software | Aimless (0.1.29) |
Phasing software | PHASER |
Refinement software | PHENIX (dev_1439) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 42.040 | 42.040 | 1.820 |
High resolution limit [Å] | 1.780 | 9.080 | 1.780 |
Rmerge | 0.037 | 0.032 | 0.471 |
Rmeas | 0.040 | 0.036 | 0.506 |
Rpim | 0.015 | 0.015 | 0.185 |
Number of reflections | 33442 | 155 | 938 |
<I/σ(I)> | 28.1 | 4 | |
Completeness [%] | 99.2 | 98.9 | 98.5 |
Redundancy | 7.2 | 5.6 | 7.3 |
CC(1/2) | 0.999 | 0.998 | 0.971 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 291 | 20% PEG3350, 0.2 M disodium tartrate |