Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help

7RAY

Crystal structure of MBD2 with DNA

Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeSYNCHROTRON
Source detailsAPS BEAMLINE 23-ID-D
Synchrotron siteAPS
Beamline23-ID-D
Temperature [K]100
Detector technologyPIXEL
Collection date2013-07-25
DetectorDECTRIS PILATUS3 6M
Wavelength(s)0.97934
Spacegroup nameC 2 2 21
Unit cell lengths37.599, 71.992, 126.107
Unit cell angles90.00, 90.00, 90.00
Refinement procedure
Resolution36.000 - 1.780
R-factor0.2113
Rwork0.209
R-free0.25270
Structure solution methodMOLECULAR REPLACEMENT
Starting model (for MR)6c2z
RMSD bond length0.007
RMSD bond angle1.217
Data reduction softwareXDS
Data scaling softwareAimless (0.1.29)
Phasing softwarePHASER
Refinement softwarePHENIX (dev_1439)
Data quality characteristics
 OverallInner shellOuter shell
Low resolution limit [Å]42.04042.0401.820
High resolution limit [Å]1.7809.0801.780
Rmerge0.0370.0320.471
Rmeas0.0400.0360.506
Rpim0.0150.0150.185
Number of reflections33442155938
<I/σ(I)>28.14
Completeness [%]99.298.998.5
Redundancy7.25.67.3
CC(1/2)0.9990.9980.971
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1VAPOR DIFFUSION, SITTING DROP29120% PEG3350, 0.2 M disodium tartrate

219869

PDB entries from 2024-05-15

PDB statisticsPDBj update infoContact PDBjnumon