7R38
Crystal structure of S-adenosyl-L-homocysteine hydrolase from Pyrococcus furiosus in complex with S-inosyl-L-homocysteine
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | SLS BEAMLINE X06SA |
Synchrotron site | SLS |
Beamline | X06SA |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2021-03-13 |
Detector | DECTRIS EIGER X 16M |
Wavelength(s) | 1.0 |
Spacegroup name | P 42 21 2 |
Unit cell lengths | 111.683, 111.683, 121.599 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 53.400 - 2.050 |
R-factor | 0.1784 |
Rwork | 0.176 |
R-free | 0.21880 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 5axa |
RMSD bond length | 0.002 |
RMSD bond angle | 0.571 |
Data reduction software | XDS |
Data scaling software | SCALA |
Phasing software | PHASER |
Refinement software | REFMAC (5.8.0267) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 82.254 | 2.085 |
High resolution limit [Å] | 2.050 | 2.050 |
Rmerge | 0.108 | |
Number of reflections | 48734 | 2405 |
<I/σ(I)> | 15.5 | |
Completeness [%] | 99.8 | |
Redundancy | 12.8 | |
CC(1/2) | 0.990 | 0.860 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 8 | 295 | 26% (w/v) PEG 1500 with 100 mM MMT, pH 8.0 |