7R2H
0.79A resolution structure of DMSO bound Cyclophilin D
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | ALBA BEAMLINE XALOC |
Synchrotron site | ALBA |
Beamline | XALOC |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2018-03-23 |
Detector | DECTRIS PILATUS 6M |
Wavelength(s) | 0.8265 |
Spacegroup name | P 41 21 2 |
Unit cell lengths | 57.348, 57.348, 87.562 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 36.800 - 0.790 |
R-factor | 0.144 |
Rwork | 0.143 |
R-free | 0.15490 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 6r8w |
RMSD bond length | 0.005 |
RMSD bond angle | 0.906 |
Data reduction software | autoPROC (1.0.5) |
Data scaling software | autoPROC (1.0.5) |
Phasing software | PHASER (ccp4i 7.0) |
Refinement software | PHENIX (1.19_4092) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 36.800 | 0.818 |
High resolution limit [Å] | 0.790 | 0.790 |
Number of reflections | 148904 | 12036 |
<I/σ(I)> | 12.96 | |
Completeness [%] | 93.5 | |
Redundancy | 5.2 | |
CC(1/2) | 0.999 | 0.623 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 7 | 277.15 | 15 % PEG 3350, 0.1M K2HPO4 |