7QYZ
Crystal structure of a DyP-type peroxidase 6E10 variant from Pseudomonas putida
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | ALBA BEAMLINE XALOC |
Synchrotron site | ALBA |
Beamline | XALOC |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2019-06-14 |
Detector | DECTRIS PILATUS 6M |
Wavelength(s) | 0.9792 |
Spacegroup name | P 2 3 |
Unit cell lengths | 108.721, 108.721, 108.721 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 48.622 - 2.452 |
Rwork | 0.222 |
R-free | 0.25500 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | PpDyP WT |
Data reduction software | XDS |
Data scaling software | XSCALE |
Phasing software | PHASER |
Refinement software | PHENIX (1.13_2998) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 48.622 | 2.540 |
High resolution limit [Å] | 2.450 | 2.450 |
Rpim | 0.028 | 0.319 |
Number of reflections | 14987 | 2546 |
<I/σ(I)> | 17 | |
Completeness [%] | 93.5 | |
Redundancy | 4.9 | |
CC(1/2) | 0.990 | 0.461 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 7.8 | 293.15 | 0.075 M sodium bromide, 0.05 M sodium fluoride, 0.1 M HEPES pH 7.8, 22.5 % v/v PEG Smear Broad and 0.075 M sodium iodide |