7QTF
Crystal Structure of the Fe(II)/alpha-ketoglutarate dependent dioxygenase PlaO1 in complex with sodium succinate
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | SLS BEAMLINE X06SA |
Synchrotron site | SLS |
Beamline | X06SA |
Temperature [K] | 100 |
Detector technology | CCD |
Collection date | 2010-09-17 |
Detector | MARMOSAIC 225 mm CCD |
Wavelength(s) | 1.00000 |
Spacegroup name | P 1 21 1 |
Unit cell lengths | 63.894, 108.172, 115.033 |
Unit cell angles | 90.00, 93.87, 90.00 |
Refinement procedure
Resolution | 48.460 - 1.550 |
R-factor | 0.1516 |
Rwork | 0.150 |
R-free | 0.17290 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 1gqw |
Data reduction software | autoPROC (1.0.5) |
Data scaling software | Aimless (0.7.4) |
Phasing software | MOLREP |
Refinement software | PHENIX (1.20-4459) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 78.720 | 78.720 | 1.630 |
High resolution limit [Å] | 1.550 | 4.890 | 1.550 |
Rmerge | 0.039 | 0.014 | 0.548 |
Rmeas | 0.046 | 0.016 | 0.641 |
Rpim | 0.024 | 0.008 | 0.329 |
Total number of observations | 857403 | 27291 | 123600 |
Number of reflections | 226503 | 7290 | 33039 |
<I/σ(I)> | 19.4 | 61.1 | 2.4 |
Completeness [%] | 99.8 | 99.3 | 99.9 |
Redundancy | 3.8 | 3.7 | 3.7 |
CC(1/2) | 1.000 | 1.000 | 0.844 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 7 | 310 | 36 % Tacsimate pH 7.0 soak: 15 min 375 mM Na succinate, 250 mM NaHCO3 Cryo: 100 % Tacsimate pH 7.0 |