7QSY
Non-obligately L8S8-complex forming RubisCO derived from ancestral sequence reconstruction and rational engineering in L8S8 complex
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | ESRF BEAMLINE ID23-2 |
Synchrotron site | ESRF |
Beamline | ID23-2 |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2021-07-09 |
Detector | DECTRIS PILATUS3 2M |
Wavelength(s) | 0.873128 |
Spacegroup name | I 1 2 1 |
Unit cell lengths | 109.352, 106.608, 192.289 |
Unit cell angles | 90.00, 98.74, 90.00 |
Refinement procedure
Resolution | 29.340 - 2.100 |
R-factor | 0.1708 |
Rwork | 0.170 |
R-free | 0.19690 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 6ura |
Data reduction software | XDS (20210323) |
Data scaling software | SCALA (3.3.22) |
Phasing software | PHENIX (1.18.2_3874) |
Refinement software | PHENIX (1.18.2_3874) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 29.829 | 29.829 | 2.210 |
High resolution limit [Å] | 2.100 | 6.640 | 2.100 |
Rmerge | 0.088 | 0.607 | |
Rmeas | 0.244 | 0.096 | 0.656 |
Rpim | 0.092 | 0.036 | 0.245 |
Total number of observations | 856910 | 24308 | 127353 |
Number of reflections | 124497 | 3610 | 18077 |
<I/σ(I)> | 6.3 | 13.7 | 2.6 |
Completeness [%] | 98.1 | 87.3 | 97.8 |
Redundancy | 6.9 | 6.7 | 7 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 7.7 | 288 | Purified enzyme (5 mg/mL) in 25 mM Tricine-NaOH, 75 mM NaCl, pH 8.0 was incubated at 3% (v/v) CO2 in air and 30 degrees C for 1 h in the presence of 0.2 mM CABP and 3.2 mM MgCl2. The enzyme was then mixed in a 1:1 ratio with 0.2 M Hepes, 20 % (w/v) polyethylene glycol 4000, pH 7.7. Before flash freezing the crystals in liquid nitrogen PEG200 was added to the mother liquor as cryoprotectant to a final concentration of 40 % (w/v). |