7QOD
Native structure of a small alarmone hydrolase (RelH) from Corynebacterium glutamicum
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | PETRA III, EMBL c/o DESY BEAMLINE P14 (MX2) |
Synchrotron site | PETRA III, EMBL c/o DESY |
Beamline | P14 (MX2) |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2019-06-28 |
Detector | DECTRIS EIGER X 16M |
Wavelength(s) | 0.97624 |
Spacegroup name | P 63 |
Unit cell lengths | 94.332, 94.332, 80.561 |
Unit cell angles | 90.00, 90.00, 120.00 |
Refinement procedure
Resolution | 36.430 - 1.850 |
R-factor | 0.178 |
Rwork | 0.177 |
R-free | 0.20630 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | SeMet RelH |
Data reduction software | XDS (20190315) |
Data scaling software | XDS (20190315) |
Phasing software | PHASER (2.8.2) |
Refinement software | PHENIX (1.19.2) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 40.703 | 40.703 | 1.960 |
High resolution limit [Å] | 1.850 | 5.500 | 1.850 |
Rmerge | 0.084 | 0.053 | 1.475 |
Rmeas | 0.096 | 0.061 | 1.691 |
Total number of observations | 282347 | ||
Number of reflections | 67471 | 2562 | 10790 |
<I/σ(I)> | 8.82 | 26.35 | 0.89 |
Completeness [%] | 98.5 | 98.2 | 97.5 |
Redundancy | 4.185 | 4.261 | 4.155 |
CC(1/2) | 0.996 | 0.995 | 0.377 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 7 | 293.15 | 0.1 M imidazole, 12% (w/v) PEG 20000 |