7QFC
Crystal structure of cytotoxin 13 from Naja naja, orthorhombic form
This is a non-PDB format compatible entry.
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | PETRA III, EMBL c/o DESY BEAMLINE P14 (MX2) |
Synchrotron site | PETRA III, EMBL c/o DESY |
Beamline | P14 (MX2) |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2016-06-14 |
Detector | DECTRIS PILATUS 12M |
Wavelength(s) | 0.9763 |
Spacegroup name | C 2 2 21 |
Unit cell lengths | 88.759, 97.175, 131.917 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 14.890 - 2.600 |
Rwork | 0.205 |
R-free | 0.25470 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 1rl5 |
RMSD bond length | 0.013 |
RMSD bond angle | 2.191 |
Data reduction software | XDS |
Data scaling software | Aimless |
Phasing software | PHASER |
Refinement software | REFMAC (5.8.0257) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 50.000 | 2.630 |
High resolution limit [Å] | 2.600 | 2.600 |
Number of reflections | 18995 | 1199 |
<I/σ(I)> | 1.8 | |
Completeness [%] | 99.2 | 99.6 |
Redundancy | 6.3 | |
CC(1/2) | 0.890 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION | 5.5 | 293 | NaCl, sodium dihydrogen phosphate, 0.1M MES pH 5.5 |