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7QEK

Structure of the ligand binding domain of the antibiotic biosynthesis regulator AdmX from the rhizobacterium Serratia plymuthica A153 bound to the auxin indole-3-piruvic acid (IPA).

Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeSYNCHROTRON
Source detailsESRF BEAMLINE MASSIF-3
Synchrotron siteESRF
BeamlineMASSIF-3
Temperature [K]100
Detector technologyPIXEL
Collection date2018-06-22
DetectorDECTRIS EIGER X 4M
Wavelength(s)0.9677
Spacegroup nameP 21 21 21
Unit cell lengths53.213, 76.036, 94.134
Unit cell angles90.00, 90.00, 90.00
Refinement procedure
Resolution35.260 - 2.250
R-factor0.2099
Rwork0.207
R-free0.25770
Structure solution methodMOLECULAR REPLACEMENT
Starting model (for MR)7qej
Data reduction softwareXDS
Data scaling softwareAimless (0.7.7)
Phasing softwareMOLREP
Refinement softwarePHENIX (1.19_4092)
Data quality characteristics
 OverallInner shellOuter shell
Low resolution limit [Å]94.13094.1302.320
High resolution limit [Å]2.2509.0002.250
Rmerge0.0580.0150.973
Rmeas0.0660.0171.100
Rpim0.0310.0080.504
Total number of observations8321912467921
Number of reflections185023401696
<I/σ(I)>14.555.71.5
Completeness [%]98.897.599.5
Redundancy4.53.74.7
CC(1/2)0.9991.0000.603
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1COUNTER-DIFFUSION8293Tris-HCl 0.1M pH 8.0, PEG 8000 30%

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PDB entries from 2024-05-15

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