7QEJ
Structure of the ligand binding domain of the antibiotic biosynthesis regulator AdmX from the rhizobacterium Serratia plymuthica A153 bound to the auxin indole-3-acetic acid (IAA).
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | ALBA BEAMLINE XALOC |
Synchrotron site | ALBA |
Beamline | XALOC |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2018-05-25 |
Detector | DECTRIS PILATUS 6M |
Wavelength(s) | 0.979 |
Spacegroup name | P 21 21 2 |
Unit cell lengths | 87.120, 92.145, 49.922 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 63.310 - 1.810 |
R-factor | 0.1811 |
Rwork | 0.180 |
R-free | 0.21080 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | AF2 |
Data reduction software | XDS |
Data scaling software | Aimless |
Phasing software | Arcimboldo |
Refinement software | PHENIX (1.19_4092) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 63.310 | 63.310 | 1.900 |
High resolution limit [Å] | 1.810 | 5.710 | 1.810 |
Rmerge | 0.068 | 0.032 | 0.736 |
Rmeas | 0.078 | 0.037 | 0.839 |
Rpim | 0.037 | 0.018 | 0.395 |
Total number of observations | 155653 | 4830 | 23342 |
Number of reflections | 37280 | 1308 | 5406 |
<I/σ(I)> | 10.4 | 26.9 | 1.5 |
Completeness [%] | 99.2 | 98.2 | 99.8 |
Redundancy | 4.2 | 3.7 | 4.3 |
CC(1/2) | 0.998 | 0.999 | 0.689 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | COUNTER-DIFFUSION | 8.5 | 293 | C1: 30%PEG 4K, 0.2M Mg Chloride, 0.1M Tris-HCl pH 8.50 |