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7QEF

Crystal structure of para-nitrophenyl-Beta-D-glucuronide bound to a mutant of SN243 (D415A)

Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeSYNCHROTRON
Source detailsDIAMOND BEAMLINE I24
Synchrotron siteDiamond
BeamlineI24
Temperature [K]100
Detector technologyPIXEL
Collection date2021-06-22
DetectorDECTRIS PILATUS3 6M
Wavelength(s)0.9999
Spacegroup nameP 1
Unit cell lengths63.376, 81.675, 93.548
Unit cell angles66.57, 89.39, 89.17
Refinement procedure
Resolution48.081 - 2.410
R-factor0.2185
Rwork0.215
R-free0.28550
Structure solution methodMOLECULAR REPLACEMENT
Starting model (for MR)7qe1
Data reduction softwareXDS
Data scaling softwareAimless (0.7.7)
Phasing softwarePHASER
Refinement softwarePHENIX (1.16_3549)
Data quality characteristics
 OverallInner shellOuter shell
Low resolution limit [Å]85.83085.8302.540
High resolution limit [Å]2.4107.6202.410
Rmerge0.1220.0560.881
Rmeas0.1600.0711.188
Rpim0.1010.0430.790
Total number of observations130173431117322
Number of reflections6288118629222
<I/σ(I)>6.517.41.8
Completeness [%]94.588.394.6
Redundancy2.12.31.9
CC(1/2)0.9860.9900.412
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1VAPOR DIFFUSION, SITTING DROP6.52830.1 M MES pH 6.5, 0.01 M ZnSO4 and 25% PEG MME 550

246031

PDB entries from 2025-12-10

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