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7QBN

Structure of cathepsin K in complex with the azadipeptide nitrile inhibitor Gu1303

Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeROTATING ANODE
Source detailsRIGAKU MICROMAX-007 HF
Temperature [K]100
Detector technologyPIXEL
Collection date2019-02-28
DetectorDECTRIS PILATUS 300K
Wavelength(s)1.5419
Spacegroup nameP 21 21 2
Unit cell lengths75.009, 76.200, 32.870
Unit cell angles90.00, 90.00, 90.00
Refinement procedure
Resolution37.500 - 1.550
R-factor0.1439
Rwork0.143
R-free0.16650
Structure solution methodMOLECULAR REPLACEMENT
Starting model (for MR)7nxm
RMSD bond length0.012
RMSD bond angle1.647
Data reduction softwareXDS
Data scaling softwareXSCALE
Phasing softwareMOLREP
Refinement softwareREFMAC (5.8.0258)
Data quality characteristics
 OverallInner shellOuter shell
Low resolution limit [Å]37.50037.5001.640
High resolution limit [Å]1.5504.6101.550
Rmerge0.0850.0380.387
Rmeas0.0920.0410.431
Total number of observations153974
Number of reflections2364611771843
<I/σ(I)>19.4342.554.39
Completeness [%]83.498.441
Redundancy6.5126.4494.666
CC(1/2)0.9980.9990.891
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1VAPOR DIFFUSION, HANGING DROP29012.5% PEG 1000, 12.5% PEG 3350, 12.5% MPD, 0.03 M sodium nitrate, 0.03 M disodium hydrogen phosphate, 0.03 M ammonium sulfate, 0.1 M MES/imidazole pH 6.5

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PDB entries from 2024-05-15

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