7Q93
Crystal Structure of Agrobacterium tumefaciens NADQ, NAD complex.
This is a non-PDB format compatible entry.
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | PETRA III, EMBL c/o DESY BEAMLINE P13 (MX1) |
Synchrotron site | PETRA III, EMBL c/o DESY |
Beamline | P13 (MX1) |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2020-09-10 |
Detector | DECTRIS PILATUS 6M-F |
Wavelength(s) | 0.9762 |
Spacegroup name | P 1 21 1 |
Unit cell lengths | 58.665, 133.721, 87.795 |
Unit cell angles | 90.00, 101.05, 90.00 |
Refinement procedure
Resolution | 86.170 - 2.190 |
R-factor | 0.2293 |
Rwork | 0.228 |
R-free | 0.25880 |
Structure solution method | FOURIER SYNTHESIS |
Starting model (for MR) | native structure |
RMSD bond length | 0.002 |
RMSD bond angle | 0.455 |
Data reduction software | XDS |
Data scaling software | Aimless |
Phasing software | PHENIX |
Refinement software | PHENIX (1.19.2_4158) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 86.170 | 2.268 |
High resolution limit [Å] | 2.190 | 2.190 |
Rmerge | 0.062 | 0.435 |
Rmeas | 0.087 | 0.615 |
Number of reflections | 67319 | 6657 |
<I/σ(I)> | 10.27 | 1.7 |
Completeness [%] | 98.7 | 98.27 |
Redundancy | 2 | 2 |
CC(1/2) | 0.984 | 0.680 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 7 | 291 | 100 mM Bis-tris-propane, 250 mM sodium potassium tartrate, 24 % (w/v) PEG 3400 |