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7PVP

Crystal structure of the SAKe6BC designer protein

Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeSYNCHROTRON
Source detailsDIAMOND BEAMLINE I24
Synchrotron siteDiamond
BeamlineI24
Temperature [K]100
Detector technologyPIXEL
Collection date2021-09-25
DetectorDECTRIS PILATUS3 6M
Wavelength(s)0.99990
Spacegroup nameP 1
Unit cell lengths34.342, 46.858, 46.911
Unit cell angles60.06, 89.99, 89.97
Refinement procedure
Resolution40.650 - 1.800
R-factor0.1747
Rwork0.173
R-free0.21440
Structure solution methodMOLECULAR REPLACEMENT
Starting model (for MR)Designed model
Data reduction softwareXDS
Data scaling softwareAimless (0.7.7)
Phasing softwarePHASER (2.8.3)
Refinement softwarePHENIX (1.19.2-4158)
Data quality characteristics
 OverallInner shellOuter shell
Low resolution limit [Å]40.65040.6501.840
High resolution limit [Å]1.8009.0001.800
Rmerge0.0740.0370.444
Rmeas0.0880.0440.533
Rpim0.0470.0240.292
Total number of observations784355784166
Number of reflections227411761294
<I/σ(I)>6.816.31.8
Completeness [%]97.095.795.6
Redundancy3.43.33.2
CC(1/2)0.9970.9960.862
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1VAPOR DIFFUSION, HANGING DROP293.150.2 M Ammonium phosphate, 0.1 M tris pH 8.5, 50% (v/v) MPD

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PDB entries from 2024-05-15

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