7PVP
Crystal structure of the SAKe6BC designer protein
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | DIAMOND BEAMLINE I24 |
Synchrotron site | Diamond |
Beamline | I24 |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2021-09-25 |
Detector | DECTRIS PILATUS3 6M |
Wavelength(s) | 0.99990 |
Spacegroup name | P 1 |
Unit cell lengths | 34.342, 46.858, 46.911 |
Unit cell angles | 60.06, 89.99, 89.97 |
Refinement procedure
Resolution | 40.650 - 1.800 |
R-factor | 0.1747 |
Rwork | 0.173 |
R-free | 0.21440 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | Designed model |
Data reduction software | XDS |
Data scaling software | Aimless (0.7.7) |
Phasing software | PHASER (2.8.3) |
Refinement software | PHENIX (1.19.2-4158) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 40.650 | 40.650 | 1.840 |
High resolution limit [Å] | 1.800 | 9.000 | 1.800 |
Rmerge | 0.074 | 0.037 | 0.444 |
Rmeas | 0.088 | 0.044 | 0.533 |
Rpim | 0.047 | 0.024 | 0.292 |
Total number of observations | 78435 | 578 | 4166 |
Number of reflections | 22741 | 176 | 1294 |
<I/σ(I)> | 6.8 | 16.3 | 1.8 |
Completeness [%] | 97.0 | 95.7 | 95.6 |
Redundancy | 3.4 | 3.3 | 3.2 |
CC(1/2) | 0.997 | 0.996 | 0.862 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 293.15 | 0.2 M Ammonium phosphate, 0.1 M tris pH 8.5, 50% (v/v) MPD |