7PVE
Crystal structure of the C-terminal catalytic domain of Plasmodium falciparum CTP:phosphocholine cytidylyltransferase with 4-bromo-1H-imidazole
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | ESRF BEAMLINE MASSIF-1 |
Synchrotron site | ESRF |
Beamline | MASSIF-1 |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2021-03-12 |
Detector | DECTRIS PILATUS3 2M |
Wavelength(s) | 0.96546 |
Spacegroup name | I 2 2 2 |
Unit cell lengths | 50.497, 70.089, 118.448 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 40.970 - 2.390 |
R-factor | 0.2014 |
Rwork | 0.200 |
R-free | 0.22900 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 4zct |
Data reduction software | XDS |
Data scaling software | Aimless (0.7.4) |
Phasing software | PHASER |
Refinement software | PHENIX (v1.19) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 41.010 | 41.010 | 2.070 |
High resolution limit [Å] | 2.010 | 9.010 | 2.010 |
Rmerge | 0.077 | 0.046 | 1.118 |
Rmeas | 0.100 | 0.058 | 1.499 |
Rpim | 0.062 | 0.035 | 0.989 |
Total number of observations | 47481 | 589 | 2886 |
Number of reflections | 8630 | 255 | 844 |
<I/σ(I)> | 6.5 | 17.2 | 1.2 |
Completeness [%] | 84.6 | 77.9 | 78 |
Redundancy | 2 | 2.3 | 1.9 |
CC(1/2) | 0.991 | 0.995 | 0.158 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION | 8 | 291.15 | PEG 4000 19%, TRIS pH8 0.1M 6-7-8-9-10% Guanidine HCL 5-6-7% Glycerol |