7PV9
Listeria monocytogene InlB (internalin B) residues 36-392 (internalin domain and B-repeat)
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | PETRA III, EMBL c/o DESY BEAMLINE P13 (MX1) |
Synchrotron site | PETRA III, EMBL c/o DESY |
Beamline | P13 (MX1) |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2017-11-28 |
Detector | DECTRIS PILATUS 6M |
Wavelength(s) | 0.9164 |
Spacegroup name | P 21 21 21 |
Unit cell lengths | 44.490, 148.410, 220.020 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 48.270 - 3.300 |
R-factor | 0.2324 |
Rwork | 0.230 |
R-free | 0.27230 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 1h6t 2y5p |
RMSD bond length | 0.003 |
RMSD bond angle | 0.631 |
Data reduction software | XDS (VERSION Jan 26, 2018 BUILT=20180307) |
Data scaling software | XSCALE (VERSION Jan 26, 2018 BUILT=20180307) |
Phasing software | PHASER (2.8.2) |
Refinement software | PHENIX (1.19.2_4158) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 50.000 | 3.390 |
High resolution limit [Å] | 3.300 | 3.300 |
Rmeas | 0.340 | 1.205 |
Number of reflections | 22938 | 1677 |
<I/σ(I)> | 6.49 | 1.96 |
Completeness [%] | 99.9 | 99.9 |
Redundancy | 8.5 | 8.4 |
CC(1/2) | 0.992 | 0.600 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 7.5 | 293 | Reservoir solution (Morpheus screen (Molecular Dimensions) condition E6): 0.1 M (HEPES sodium salt / MOPS acid), pH 7.5, 20 % v/v ethylene glycol, 10 % w/v PEG 8,000, 0.03 M diethylene glycol, 0.03 M triethylene-glycol, 0.03 M tetraethylene glycol, 0.03 M pentaethylene glycol; Protein solution: 10 mg/ml in 10 mM Tris, pH 8.0, 20 mM NaCl; Drop size: 100 nl + 100 nl (protein + reservoir) |