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7PV9

Listeria monocytogene InlB (internalin B) residues 36-392 (internalin domain and B-repeat)

Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeSYNCHROTRON
Source detailsPETRA III, EMBL c/o DESY BEAMLINE P13 (MX1)
Synchrotron sitePETRA III, EMBL c/o DESY
BeamlineP13 (MX1)
Temperature [K]100
Detector technologyPIXEL
Collection date2017-11-28
DetectorDECTRIS PILATUS 6M
Wavelength(s)0.9164
Spacegroup nameP 21 21 21
Unit cell lengths44.490, 148.410, 220.020
Unit cell angles90.00, 90.00, 90.00
Refinement procedure
Resolution48.270 - 3.300
R-factor0.2324
Rwork0.230
R-free0.27230
Structure solution methodMOLECULAR REPLACEMENT
Starting model (for MR)1h6t 2y5p
RMSD bond length0.003
RMSD bond angle0.631
Data reduction softwareXDS (VERSION Jan 26, 2018 BUILT=20180307)
Data scaling softwareXSCALE (VERSION Jan 26, 2018 BUILT=20180307)
Phasing softwarePHASER (2.8.2)
Refinement softwarePHENIX (1.19.2_4158)
Data quality characteristics
 OverallOuter shell
Low resolution limit [Å]50.0003.390
High resolution limit [Å]3.3003.300
Rmeas0.3401.205
Number of reflections229381677
<I/σ(I)>6.491.96
Completeness [%]99.999.9
Redundancy8.58.4
CC(1/2)0.9920.600
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1VAPOR DIFFUSION, SITTING DROP7.5293Reservoir solution (Morpheus screen (Molecular Dimensions) condition E6): 0.1 M (HEPES sodium salt / MOPS acid), pH 7.5, 20 % v/v ethylene glycol, 10 % w/v PEG 8,000, 0.03 M diethylene glycol, 0.03 M triethylene-glycol, 0.03 M tetraethylene glycol, 0.03 M pentaethylene glycol; Protein solution: 10 mg/ml in 10 mM Tris, pH 8.0, 20 mM NaCl; Drop size: 100 nl + 100 nl (protein + reservoir)

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