7PUP
INOSITOL 1,3,4-TRISPHOSPHATE 5/6-KINASE 4 from Arabidopsis thaliana (AtITPK4) in complex with ATP
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | DIAMOND BEAMLINE I04 |
Synchrotron site | Diamond |
Beamline | I04 |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2018-09-12 |
Detector | DECTRIS EIGER2 X 16M |
Wavelength(s) | 0.9795 |
Spacegroup name | P 21 21 21 |
Unit cell lengths | 45.618, 61.807, 176.474 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 44.170 - 1.910 |
R-factor | 0.2114 |
Rwork | 0.210 |
R-free | 0.24130 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 1z2n |
RMSD bond length | 0.009 |
RMSD bond angle | 1.139 |
Data reduction software | xia2 |
Data scaling software | Aimless |
Phasing software | PHASER |
Refinement software | PHENIX (1.19.2_4158) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 44.170 | 1.980 |
High resolution limit [Å] | 1.910 | 1.910 |
Rmerge | 0.185 | 2.965 |
Rmeas | 0.193 | 2.808 |
Rpim | 0.053 | 0.842 |
Number of reflections | 39622 | 3887 |
<I/σ(I)> | 10.14 | 0.87 |
Completeness [%] | 99.9 | 99.7 |
Redundancy | 13.1 | 13.1 |
CC(1/2) | 0.998 | 0.376 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 289 | 20% PEG 4000, 0.1M MgCl2, 0.1M Tris pH7.8 |