7PUI
Crystal structure of the C-terminal catalytic domain of Plasmodium falciparum CTP:phosphocholine cytidylyltransferase with 2-pyridineboronic acid
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | ESRF BEAMLINE MASSIF-1 |
Synchrotron site | ESRF |
Beamline | MASSIF-1 |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2021-03-12 |
Detector | DECTRIS PILATUS3 2M |
Wavelength(s) | 0.96546 |
Spacegroup name | I 2 2 2 |
Unit cell lengths | 50.401, 69.078, 117.835 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 59.590 - 2.080 |
R-factor | 0.2123 |
Rwork | 0.211 |
R-free | 0.24090 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 4zct |
Data reduction software | XDS |
Data scaling software | Aimless (0.7.4) |
Phasing software | PHASER |
Refinement software | PHENIX (1.19.2_4158) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 59.590 | 59.590 | 2.140 |
High resolution limit [Å] | 2.080 | 9.060 | 2.080 |
Rmerge | 0.088 | 0.059 | 1.322 |
Rmeas | 0.100 | 0.068 | 1.502 |
Rpim | 0.046 | 0.033 | 0.695 |
Total number of observations | 56095 | 730 | 3489 |
Number of reflections | 12538 | 181 | 1106 |
<I/σ(I)> | 8.7 | 21.3 | 1.2 |
Completeness [%] | 98.5 | 98.3 | 85.7 |
Redundancy | 4.5 | 4 | 4.2 |
CC(1/2) | 0.996 | 0.996 | 0.440 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION | 8 | 291.15 | PEG 4000 19%, TRIS pH8 0.1M 6-7-8-9-10% guanidine HCL 5-6-7% Glycerol |