Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help

7PND

Crystal structure of profragilysin-3 (proBFT-3) from Bacteroides fragilis at 1.85 A resolution.

Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeSYNCHROTRON
Source detailsDIAMOND BEAMLINE I04-1
Synchrotron siteDiamond
BeamlineI04-1
Temperature [K]100
Detector technologyPIXEL
Collection date2020-02-03
DetectorDECTRIS PILATUS 6M
Wavelength(s)0.91190
Spacegroup nameP 21 21 21
Unit cell lengths68.720, 82.740, 158.900
Unit cell angles90.00, 90.00, 90.00
Refinement procedure
Resolution63.070 - 1.850
R-factor0.1888
Rwork0.189
R-free0.21120
Structure solution methodMOLECULAR REPLACEMENT
Starting model (for MR)3p24
RMSD bond length0.008
RMSD bond angle0.910
Data reduction softwareXDS
Data scaling softwareXSCALE
Phasing softwarePHASER
Refinement softwareBUSTER (2.10.3 (6-FEB-2020))
Data quality characteristics
 OverallOuter shell
Low resolution limit [Å]63.0701.870
High resolution limit [Å]1.8501.850
Number of reflections780682110
<I/σ(I)>13.4
Completeness [%]100.0
Redundancy13
CC(1/2)0.9990.706
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1VAPOR DIFFUSION, SITTING DROP277.1518% (w/v) PEG3350, 0.2 M magnesium formate, pH 5.9.

219869

PDB entries from 2024-05-15

PDB statisticsPDBj update infoContact PDBjnumon