7PND
Crystal structure of profragilysin-3 (proBFT-3) from Bacteroides fragilis at 1.85 A resolution.
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | DIAMOND BEAMLINE I04-1 |
Synchrotron site | Diamond |
Beamline | I04-1 |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2020-02-03 |
Detector | DECTRIS PILATUS 6M |
Wavelength(s) | 0.91190 |
Spacegroup name | P 21 21 21 |
Unit cell lengths | 68.720, 82.740, 158.900 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 63.070 - 1.850 |
R-factor | 0.1888 |
Rwork | 0.189 |
R-free | 0.21120 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 3p24 |
RMSD bond length | 0.008 |
RMSD bond angle | 0.910 |
Data reduction software | XDS |
Data scaling software | XSCALE |
Phasing software | PHASER |
Refinement software | BUSTER (2.10.3 (6-FEB-2020)) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 63.070 | 1.870 |
High resolution limit [Å] | 1.850 | 1.850 |
Number of reflections | 78068 | 2110 |
<I/σ(I)> | 13.4 | |
Completeness [%] | 100.0 | |
Redundancy | 13 | |
CC(1/2) | 0.999 | 0.706 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 277.15 | 18% (w/v) PEG3350, 0.2 M magnesium formate, pH 5.9. |