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7PL0

Crystal structure of a DyP-type peroxidase 5G5 variant from Bacillus subtilis

Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeSYNCHROTRON
Source detailsESRF BEAMLINE MASSIF-3
Synchrotron siteESRF
BeamlineMASSIF-3
Temperature [K]100
Detector technologyPIXEL
Collection date2021-06-18
DetectorDECTRIS EIGER X 4M
Wavelength(s)0.9680
Spacegroup nameP 1 21 1
Unit cell lengths63.852, 114.760, 116.819
Unit cell angles90.00, 104.00, 90.00
Refinement procedure
Resolution61.960 - 2.100
R-factor0.1912
Rwork0.191
R-free0.21520
Structure solution methodMOLECULAR REPLACEMENT
Starting model (for MR)7pkx
Data reduction softwareXDS
Data scaling softwareXSCALE
Phasing softwarePHASER
Refinement softwarePHENIX (1.17.1_3660)
Data quality characteristics
 OverallOuter shell
Low resolution limit [Å]61.9602.200
High resolution limit [Å]2.1002.100
Rmeas0.1220.111
Rpim0.0580.352
Number of reflections9249915038
<I/σ(I)>9.02
Completeness [%]97.1
Redundancy3.1
CC(1/2)0.9960.478
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1VAPOR DIFFUSION, HANGING DROP2930.1 M Tris-HCl pH 8.5, 25% (w/v) PEG 4K, 0.2 M magnesium chloride

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PDB entries from 2024-05-15

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