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7P8B

Crystal structure of YTHDC1 with compound YLI_DC1_006

Replaces:  6YM6
Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeSYNCHROTRON
Source detailsSLS BEAMLINE X06DA
Synchrotron siteSLS
BeamlineX06DA
Temperature [K]100
Detector technologyPIXEL
Collection date2020-01-30
DetectorDECTRIS PILATUS 2M-F
Wavelength(s)1
Spacegroup nameP 1 21 1
Unit cell lengths40.070, 103.310, 42.280
Unit cell angles90.00, 105.79, 90.00
Refinement procedure
Resolution40.690 - 1.200
R-factor0.2038
Rwork0.203
R-free0.21560
Structure solution methodMOLECULAR REPLACEMENT
Starting model (for MR)4r3h
RMSD bond length0.006
RMSD bond angle0.897
Data reduction softwareXDS
Data scaling softwareXSCALE
Phasing softwarePHASER
Refinement softwarePHENIX (1.19.2_4158)
Data quality characteristics
 OverallOuter shell
Low resolution limit [Å]40.7001.270
High resolution limit [Å]1.2001.200
Number of reflections102576102576
<I/σ(I)>18.54
Completeness [%]100.0
Redundancy4.4
CC(1/2)1.0000.724
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1VAPOR DIFFUSION, HANGING DROP29525% PEG 3350, 0.2M Ammonium Sulphate, 0.1M Bis-Tris pH 6.5

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