7P4W
Crystal structure of alpha-amylase from Aspergillus oryzae in space group I222
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | DIAMOND BEAMLINE I04 |
Synchrotron site | Diamond |
Beamline | I04 |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2021-07-02 |
Detector | DECTRIS EIGER2 XE 16M |
Wavelength(s) | 0.9795 |
Spacegroup name | I 2 2 2 |
Unit cell lengths | 65.725, 140.402, 154.218 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 51.910 - 2.280 |
R-factor | 0.231 |
Rwork | 0.228 |
R-free | 0.28510 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 6taa |
RMSD bond length | 0.008 |
RMSD bond angle | 1.138 |
Data reduction software | DIALS |
Data scaling software | DIALS |
Phasing software | MOLREP |
Refinement software | REFMAC (1.17.1_3660) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 51.920 | 2.320 |
High resolution limit [Å] | 2.280 | 2.280 |
Rmerge | 9.900 | 2.270 |
Rmeas | 4.900 | 2.530 |
Rpim | 0.170 | 1.100 |
Number of reflections | 32915 | 1549 |
<I/σ(I)> | 9.2 | 0.4 |
Completeness [%] | 99.7 | |
Redundancy | 9.2 | |
CC(1/2) | 0.990 | 0.270 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 293 | 10% PEG 20k, 20% PEG 500mme, 0.1 M MES/Imidazole pH 6.5, 20 mM of each Polyamine (Morpheus Fusion screen, well H11) |