7P1Z
Novel GH12 endogluconase from Aspergillus cervinus
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | SPRING-8 BEAMLINE BL41XU |
Synchrotron site | SPring-8 |
Beamline | BL41XU |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2019-10-12 |
Detector | DECTRIS EIGER X 16M |
Wavelength(s) | 0.8 |
Spacegroup name | P 2 21 21 |
Unit cell lengths | 46.094, 118.364, 125.702 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 62.930 - 2.170 |
Rwork | 0.183 |
R-free | 0.23050 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 5gm3 |
RMSD bond length | 0.008 |
RMSD bond angle | 1.413 |
Data reduction software | DIALS |
Data scaling software | Aimless |
Phasing software | PHASER |
Refinement software | REFMAC (5.8.0267) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 125.700 | 125.700 | 2.240 |
High resolution limit [Å] | 2.170 | 8.950 | 2.170 |
Rmerge | 0.152 | 0.046 | 0.715 |
Rmeas | 0.180 | 0.054 | 0.862 |
Rpim | 0.095 | 0.029 | 0.475 |
Number of reflections | 37115 | 626 | 3144 |
<I/σ(I)> | 7.8 | ||
Completeness [%] | 99.6 | ||
Redundancy | 6.5 | 5.5 | 6.1 |
CC(1/2) | 0.995 | 0.989 | 0.866 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION | 288 | Peg 6000 18,5% 0.2M CaCl2 0.1M NaAcetate pH 5.0 |