Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help

7OQD

A single sulfatase is required for metabolism of colonic mucin O-glycans and intestinal colonization by a symbiotic human gut bacterium (BT1636-S1_20)

This is a non-PDB format compatible entry.
Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeLIQUID ANODE
Source detailsBRUKER METALJET
Temperature [K]100
Detector technologyPIXEL
Collection date2021-05-29
DetectorBruker PHOTON III
Wavelength(s)1.34
Spacegroup nameP 21 21 21
Unit cell lengths76.175, 79.196, 91.100
Unit cell angles90.00, 90.00, 90.00
Refinement procedure
Resolution18.520 - 2.300
Rwork0.238
R-free0.28840
Structure solution methodMOLECULAR REPLACEMENT
Starting model (for MR)7an1
RMSD bond length0.008
RMSD bond angle1.533
Data reduction softwareSAINT
Data scaling softwareSAINT
Phasing softwarePHASER
Refinement softwareREFMAC (5.8.0267)
Data quality characteristics
 OverallOuter shell
Low resolution limit [Å]18.5232.380
High resolution limit [Å]2.3002.300
Number of reflections248262444
<I/σ(I)>4.81.6
Completeness [%]98.8
Redundancy4
CC(1/2)0.9680.760
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1VAPOR DIFFUSION, SITTING DROP6.529340 % MPD, 0.1 M sodium cacodylate with a protein concentration of 20 mg/ml and the ligand concentration (3S-LewisA) of 20 mM.

219869

PDB entries from 2024-05-15

PDB statisticsPDBj update infoContact PDBjnumon