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7OPV

Crystal structure of the computationally designed SAKe6BE-3HH protein, alternative packing

Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeSYNCHROTRON
Source detailsDIAMOND BEAMLINE I03
Synchrotron siteDiamond
BeamlineI03
Temperature [K]100
Detector technologyPIXEL
Collection date2020-02-20
DetectorDECTRIS EIGER X 16M
Wavelength(s)0.9763
Spacegroup nameP 1
Unit cell lengths46.961, 47.152, 70.876
Unit cell angles72.18, 76.40, 60.18
Refinement procedure
Resolution40.540 - 1.950
R-factor0.1601
Rwork0.158
R-free0.20350
Structure solution methodMOLECULAR REPLACEMENT
Starting model (for MR)Design model
Data reduction softwareDIALS
Data scaling softwareAimless (0.7.4)
Phasing softwarePHASER (2.8.3)
Refinement softwarePHENIX (1.19.2-4158)
Data quality characteristics
 OverallInner shellOuter shell
Low resolution limit [Å]40.54040.5402.000
High resolution limit [Å]1.9508.9401.950
Rmerge0.0310.0260.046
Rmeas0.0370.0310.055
Rpim0.0200.0160.029
Total number of observations12009813168254
Number of reflections349683612396
<I/σ(I)>25.83617.7
Completeness [%]96.19694.2
Redundancy3.43.63.4
CC(1/2)0.9980.9990.997
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1VAPOR DIFFUSION, HANGING DROP6.5293.150.1 M MES, 1.2 M tri-Na citrate, 0.995 mM Cu(NO3)2

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PDB entries from 2024-05-15

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