7OPV
Crystal structure of the computationally designed SAKe6BE-3HH protein, alternative packing
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | DIAMOND BEAMLINE I03 |
Synchrotron site | Diamond |
Beamline | I03 |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2020-02-20 |
Detector | DECTRIS EIGER X 16M |
Wavelength(s) | 0.9763 |
Spacegroup name | P 1 |
Unit cell lengths | 46.961, 47.152, 70.876 |
Unit cell angles | 72.18, 76.40, 60.18 |
Refinement procedure
Resolution | 40.540 - 1.950 |
R-factor | 0.1601 |
Rwork | 0.158 |
R-free | 0.20350 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | Design model |
Data reduction software | DIALS |
Data scaling software | Aimless (0.7.4) |
Phasing software | PHASER (2.8.3) |
Refinement software | PHENIX (1.19.2-4158) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 40.540 | 40.540 | 2.000 |
High resolution limit [Å] | 1.950 | 8.940 | 1.950 |
Rmerge | 0.031 | 0.026 | 0.046 |
Rmeas | 0.037 | 0.031 | 0.055 |
Rpim | 0.020 | 0.016 | 0.029 |
Total number of observations | 120098 | 1316 | 8254 |
Number of reflections | 34968 | 361 | 2396 |
<I/σ(I)> | 25.8 | 36 | 17.7 |
Completeness [%] | 96.1 | 96 | 94.2 |
Redundancy | 3.4 | 3.6 | 3.4 |
CC(1/2) | 0.998 | 0.999 | 0.997 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 6.5 | 293.15 | 0.1 M MES, 1.2 M tri-Na citrate, 0.995 mM Cu(NO3)2 |