7OO5
Crystal structure of the lignin peroxidase (ApeLiP) from Agrocybe pediades
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | ALBA BEAMLINE XALOC |
Synchrotron site | ALBA |
Beamline | XALOC |
Temperature [K] | 110 |
Detector technology | PIXEL |
Collection date | 2017-07-14 |
Detector | DECTRIS PILATUS 6M |
Wavelength(s) | 0.97924 |
Spacegroup name | P 21 21 21 |
Unit cell lengths | 48.126, 74.950, 82.768 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 55.560 - 1.850 |
R-factor | 0.2336 |
Rwork | 0.232 |
R-free | 0.26870 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 4bln |
RMSD bond length | 0.008 |
RMSD bond angle | 1.138 |
Data reduction software | XDS |
Data scaling software | SCALA |
Phasing software | MOLREP |
Refinement software | REFMAC (5.8.0258) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 74.950 | 1.950 |
High resolution limit [Å] | 1.850 | 1.850 |
Rmerge | 0.058 | 0.522 |
Rmeas | 0.064 | 0.569 |
Rpim | 0.026 | 0.225 |
Number of reflections | 26316 | 3760 |
<I/σ(I)> | 15.5 | 3 |
Completeness [%] | 99.8 | 100 |
Redundancy | 6.3 | 6.4 |
CC(1/2) | 0.997 | 0.931 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 6.5 | 293 | 25% PEG500 MME, 100mM MES pH 6.5, 10mM ZnSO4 |