7ONY
Crystal structure of PBP3 from P. aeruginosa
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | PETRA III, EMBL c/o DESY BEAMLINE P13 (MX1) |
Synchrotron site | PETRA III, EMBL c/o DESY |
Beamline | P13 (MX1) |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2019-09-10 |
Detector | DECTRIS PILATUS 6M-F |
Wavelength(s) | 0.9999 |
Spacegroup name | C 1 2 1 |
Unit cell lengths | 104.057, 124.995, 74.235 |
Unit cell angles | 90.00, 122.49, 90.00 |
Refinement procedure
Resolution | 39.550 - 1.770 |
R-factor | 0.1815 |
Rwork | 0.180 |
R-free | 0.21340 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 3oc2 |
RMSD bond length | 0.004 |
RMSD bond angle | 0.666 |
Data reduction software | XDS |
Data scaling software | Aimless |
Phasing software | MOLREP |
Refinement software | PHENIX (1.19.1) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 39.550 | 1.966 |
High resolution limit [Å] | 1.770 | 1.773 |
Rmeas | 0.070 | 1.159 |
Number of reflections | 42918 | 2146 |
<I/σ(I)> | 13.9 | 1.8 |
Completeness [%] | 70.4 | 4.4 |
Redundancy | 7 | 6.4 |
CC(1/2) | 0.998 | 0.641 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 6 | 293 | 9 mg/ml PBP3, 0.1 M MES, 5% (w/v) PEG3000; 30% (v/v) PEG200, 10% DMSO |