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7OM3

Crystal structure of KOD DNA Polymerase in a binary complex with Hypoxanthine containing template

Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeSYNCHROTRON
Source detailsSLS BEAMLINE X06SA
Synchrotron siteSLS
BeamlineX06SA
Temperature [K]100
Detector technologyPIXEL
Collection date2019-07-12
DetectorDECTRIS EIGER X 16M
Wavelength(s)1.0000089622351307
Spacegroup nameP 21 21 2
Unit cell lengths113.356, 142.936, 65.582
Unit cell angles90.00, 90.00, 90.00
Refinement procedure
Resolution44.450 - 1.920
R-factor0.1841
Rwork0.183
R-free0.23370
Structure solution methodMOLECULAR REPLACEMENT
Starting model (for MR)4k8z
RMSD bond length0.012
RMSD bond angle1.214
Data reduction softwareXDS
Data scaling softwareXDS
Phasing softwarePHENIX
Refinement softwarePHENIX (1.19_4085)
Data quality characteristics
 OverallOuter shell
Low resolution limit [Å]48.3202.030
High resolution limit [Å]1.9101.910
Rmeas0.148
Number of reflections14792116579
<I/σ(I)>7.39
Completeness [%]93.364.8
Redundancy4.62.2
CC(1/2)0.9960.185
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1VAPOR DIFFUSION, SITTING DROP7.5291.15Morpheus E7: 0.12 M ethylene glycols (0.3 M diethylene glycol, 0.3 M triethylene glycol, 0.3 M tetraethylene glycol, 0.3 M pentaethylene glycol), 0.1 M sodium HEPES/MOPS pH 7.5, 50 % (v/v) of a mixture of glycerol (40 % v/v) and PEG 4000 (20 % w/v).

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