7OM3
Crystal structure of KOD DNA Polymerase in a binary complex with Hypoxanthine containing template
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | SLS BEAMLINE X06SA |
Synchrotron site | SLS |
Beamline | X06SA |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2019-07-12 |
Detector | DECTRIS EIGER X 16M |
Wavelength(s) | 1.0000089622351307 |
Spacegroup name | P 21 21 2 |
Unit cell lengths | 113.356, 142.936, 65.582 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 44.450 - 1.920 |
R-factor | 0.1841 |
Rwork | 0.183 |
R-free | 0.23370 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 4k8z |
RMSD bond length | 0.012 |
RMSD bond angle | 1.214 |
Data reduction software | XDS |
Data scaling software | XDS |
Phasing software | PHENIX |
Refinement software | PHENIX (1.19_4085) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 48.320 | 2.030 |
High resolution limit [Å] | 1.910 | 1.910 |
Rmeas | 0.148 | |
Number of reflections | 147921 | 16579 |
<I/σ(I)> | 7.39 | |
Completeness [%] | 93.3 | 64.8 |
Redundancy | 4.6 | 2.2 |
CC(1/2) | 0.996 | 0.185 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 7.5 | 291.15 | Morpheus E7: 0.12 M ethylene glycols (0.3 M diethylene glycol, 0.3 M triethylene glycol, 0.3 M tetraethylene glycol, 0.3 M pentaethylene glycol), 0.1 M sodium HEPES/MOPS pH 7.5, 50 % (v/v) of a mixture of glycerol (40 % v/v) and PEG 4000 (20 % w/v). |