7NZQ
D-lyxose isomerase from the hyperthermophilic archaeon Thermofilum sp complexed with D-mannose
This is a non-PDB format compatible entry.
Experimental procedure
| Experimental method | SINGLE WAVELENGTH |
| Source type | SYNCHROTRON |
| Source details | DIAMOND BEAMLINE I04 |
| Synchrotron site | Diamond |
| Beamline | I04 |
| Temperature [K] | 100 |
| Detector technology | PIXEL |
| Collection date | 2019-12-15 |
| Detector | DECTRIS EIGER2 XE 16M |
| Wavelength(s) | 0.9795 |
| Spacegroup name | C 2 2 21 |
| Unit cell lengths | 47.909, 121.013, 70.537 |
| Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
| Resolution | 37.692 - 1.570 |
| Rwork | 0.175 |
| R-free | 0.21760 |
| Structure solution method | MOLECULAR REPLACEMENT |
| Starting model (for MR) | 2y0o |
| RMSD bond length | 0.009 |
| RMSD bond angle | 1.736 |
| Data reduction software | DIALS |
| Data scaling software | Aimless |
| Phasing software | MoRDa |
| Refinement software | REFMAC (5.8.0267) |
Data quality characteristics
| Overall | Outer shell | |
| Low resolution limit [Å] | 37.692 | 1.600 |
| High resolution limit [Å] | 1.570 | 1.570 |
| Number of reflections | 29074 | 1425 |
| <I/σ(I)> | 6.6 | |
| Completeness [%] | 99.9 | |
| Redundancy | 5.2 | |
| CC(1/2) | 0.997 | 0.277 |
Crystallization Conditions
| crystal ID | method | pH | temperature | details |
| 1 | MICROBATCH | 6 | 291 | 100 mM SPG ph 6.0, 25% w/v PEG 1500, 40 mM D-mannose |
