7NPQ
Crystal structure of the human LL37(17-29) I24C mutant antimicrobial peptide
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | PETRA III, EMBL c/o DESY BEAMLINE P14 (MX2) |
Synchrotron site | PETRA III, EMBL c/o DESY |
Beamline | P14 (MX2) |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2019-12-17 |
Detector | DECTRIS EIGER X 16M |
Wavelength(s) | 0.9763 |
Spacegroup name | P 41 21 2 |
Unit cell lengths | 34.920, 34.920, 44.570 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 27.490 - 1.500 |
R-factor | 0.1803 |
Rwork | 0.179 |
R-free | 0.19170 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | PDBid 6S6M with residues mutated to alanine |
RMSD bond length | 0.012 |
RMSD bond angle | 1.946 |
Data reduction software | XDS |
Data scaling software | XSCALE |
Phasing software | PHASER |
Refinement software | REFMAC (5.8.0267) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 27.490 | 27.490 | 1.550 |
High resolution limit [Å] | 1.500 | 10.000 | 1.500 |
Rmerge | 0.052 | 0.018 | 0.658 |
Rmeas | 0.056 | 0.020 | 0.751 |
Total number of observations | 35742 | ||
Number of reflections | 4721 | 22 | 383 |
<I/σ(I)> | 19.87 | 28.96 | 2.17 |
Completeness [%] | 99.0 | 88 | 91 |
Redundancy | 7.571 | 3.864 | 3.773 |
CC(1/2) | 0.999 | 1.000 | 0.699 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 293 | The LL-37(17-29) I24C peptide was mixed with 0.1mM DTT in water: Reservoir contained 2.8 M sodium acetate trihydrate pH 7.0 |