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7NPQ

Crystal structure of the human LL37(17-29) I24C mutant antimicrobial peptide

Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeSYNCHROTRON
Source detailsPETRA III, EMBL c/o DESY BEAMLINE P14 (MX2)
Synchrotron sitePETRA III, EMBL c/o DESY
BeamlineP14 (MX2)
Temperature [K]100
Detector technologyPIXEL
Collection date2019-12-17
DetectorDECTRIS EIGER X 16M
Wavelength(s)0.9763
Spacegroup nameP 41 21 2
Unit cell lengths34.920, 34.920, 44.570
Unit cell angles90.00, 90.00, 90.00
Refinement procedure
Resolution27.490 - 1.500
R-factor0.1803
Rwork0.179
R-free0.19170
Structure solution methodMOLECULAR REPLACEMENT
Starting model (for MR)PDBid 6S6M with residues mutated to alanine
RMSD bond length0.012
RMSD bond angle1.946
Data reduction softwareXDS
Data scaling softwareXSCALE
Phasing softwarePHASER
Refinement softwareREFMAC (5.8.0267)
Data quality characteristics
 OverallInner shellOuter shell
Low resolution limit [Å]27.49027.4901.550
High resolution limit [Å]1.50010.0001.500
Rmerge0.0520.0180.658
Rmeas0.0560.0200.751
Total number of observations35742
Number of reflections472122383
<I/σ(I)>19.8728.962.17
Completeness [%]99.08891
Redundancy7.5713.8643.773
CC(1/2)0.9991.0000.699
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1VAPOR DIFFUSION, HANGING DROP293The LL-37(17-29) I24C peptide was mixed with 0.1mM DTT in water: Reservoir contained 2.8 M sodium acetate trihydrate pH 7.0

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PDB entries from 2024-05-15

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