7NEM
Hydrogenase-2 variant R479K - anaerobically oxidised form
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | DIAMOND BEAMLINE I03 |
Synchrotron site | Diamond |
Beamline | I03 |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2020-12-12 |
Detector | DECTRIS EIGER2 XE 16M |
Wavelength(s) | 0.7749 |
Spacegroup name | P 21 21 21 |
Unit cell lengths | 99.402, 100.252, 168.536 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 44.800 - 1.350 |
R-factor | 0.1505 |
Rwork | 0.150 |
R-free | 0.16730 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 6syo |
RMSD bond length | 0.012 |
RMSD bond angle | 1.795 |
Data reduction software | DIALS |
Data scaling software | Aimless |
Phasing software | PHASER |
Refinement software | REFMAC (5.8.0267) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 44.800 | 1.370 |
High resolution limit [Å] | 1.350 | 1.350 |
Rmerge | 0.143 | 1.800 |
Rmeas | 0.154 | 1.970 |
Rpim | 0.059 | 0.770 |
Number of reflections | 366877 | 18056 |
<I/σ(I)> | 10.3 | 1.3 |
Completeness [%] | 100.0 | 100 |
Redundancy | 13.4 | 12.8 |
CC(1/2) | 0.999 | 0.620 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 5.9 | 296 | 100 mM Bis tris pH 5.9, 200 mM MgCl2 19-21 % PEG 3350 |